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Unit of study_

INIM5011: Advanced Medical Bacteriology

Semester 1, 2020 [Normal day] - Camperdown/Darlington, Sydney

This unit of study aims to build on the student's basic knowledge of microbiology by providing an awareness of modern concepts and the latest knowledge of medical bacteriology at the molecular level. This knowledge is relevant to the susceptibility and response of the host to pathogenic bacteria. There is a particular emphasis on the host-pathogen relationship at the cellular and molecular levels regarding symptoms, virulence factors, pathogenesis, diagnosis, treatment, control and prevention. The practical component will allow candidates to become familiar with modern molecular-based bacteriological techniques used to identify the characteristic genetic features of bacterial species that cause infections. The unit will provide an advanced scientific and intellectual base to augment student's knowledge and understanding, at a postgraduate level, in a career involving medical microbiology or in a related subject area. Lectures will be used to impart knowledge and understanding as well as review key themes of the module, and many of these will be given by experts in the current field. Tutorials will utilise activities such as journal review and topic presentation which enable develop their skills by presenting research on a range of issues including advances in knowledge on bacterial pathogenesis, identification and treatment in Australia and worldwide. The use of case studies will enable candidates to examine breakouts of disease and their investigation by the clinical laboratory. Laboratory sessions will enable students to apply the theoretical concepts of laboratory investigation at the molecular level using advanced molecular techniques of DNA, RNA and protein purification and analysis.

Unit details and rules

Unit code INIM5011
Academic unit
Credit points 6
Prohibitions
? 
None
Prerequisites
? 
None
Corequisites
? 
None
Assumed knowledge
? 

Undergraduate Microbiology or Infectious Diseases

Available to study abroad and exchange students

No

Teaching staff

Coordinator Jim Manos, jim.manos@sydney.edu.au
Type Description Weight Due Length
Presentation group assignment Group presentation
Poster presentation
15% - 15 minutes
Outcomes assessed: LO1 LO2 LO4
Presentation group assignment Journal club
Oral presentation by students and discussion
5% - 20 minutes
Outcomes assessed: LO1 LO2
Final exam Theory exam
Written exam
50% Formal exam period 2 hours
Outcomes assessed: LO1 LO4 LO2
Participation Case studies
Slide presentation and Q and A discussion
5% Ongoing Approximately 1.5 hours
Outcomes assessed: LO1 LO2
Skills-based evaluation Practical classes
1. Assessment of learning during practicals. 2. Lab book handed in & marked
25% Week 13
Due date: 29 May 2020 at 13:00
Theory of Practical exam approx 1.5 hrs
Outcomes assessed: LO2 LO3 LO4
group assignment = group assignment ?

Assessment summary

  • Journal club: Students will work in pairs to prepare a short joint presentation on the journal article and lead a 10-minute discussion afterwards. All other students will be given the journal articles one week prior to the tutorial and will be expected to read the paper prior to the tutorial and participate in an active discussion on the topic.
  • Group presentation: Presentation sessions, each centred on one bacterial infection. Students (in groups of three) will be given a topic area two weeks in advance of their presentation.
  • Case study: The teacher will outline the case at the beginning of the tutorial. Thinking about the evidence presented, students will discuss courses of action for the resolution of each case. A synopsis of the case history will be available on Canvas after the tutorial.

Detailed information for each assessment can be found on Canvas.

Assessment criteria

The University awards common result grades, set out in the Coursework Policy 2014 (Schedule 1).

As a general guide, a high distinction indicates work of an exceptional standard, a distinction a very high standard, a credit a good standard, and a pass an acceptable standard.

Result name

Mark range

Description

High distinction

85 - 100

 

Distinction

75 - 84

 

Credit

65 - 74

 

Pass

50 - 64

 

Fail

0 - 49

When you don’t meet the learning outcomes of the unit to a satisfactory standard.

For more information see sydney.edu.au/students/guide-to-grades.

For more information see guide to grades.

Late submission

In accordance with University policy, these penalties apply when written work is submitted after 11:59pm on the due date:

  • Deduction of 5% of the maximum mark for each calendar day after the due date.
  • After ten calendar days late, a mark of zero will be awarded.

This unit has an exception to the standard University policy or supplementary information has been provided by the unit coordinator. This information is displayed below:

10% per day penalty for late lodgment of practical books. TOP exam cannot be repeated

Academic integrity

The Current Student website  provides information on academic integrity and the resources available to all students. The University expects students and staff to act ethically and honestly and will treat all allegations of academic integrity breaches seriously.  

We use similarity detection software to detect potential instances of plagiarism or other forms of academic integrity breach. If such matches indicate evidence of plagiarism or other forms of academic integrity breaches, your teacher is required to report your work for further investigation.

You may only use artificial intelligence and writing assistance tools in assessment tasks if you are permitted to by your unit coordinator, and if you do use them, you must also acknowledge this in your work, either in a footnote or an acknowledgement section.

Studiosity is permitted for postgraduate units unless otherwise indicated by the unit coordinator. The use of this service must be acknowledged in your submission.

Simple extensions

If you encounter a problem submitting your work on time, you may be able to apply for an extension of five calendar days through a simple extension.  The application process will be different depending on the type of assessment and extensions cannot be granted for some assessment types like exams.

Special consideration

If exceptional circumstances mean you can’t complete an assessment, you need consideration for a longer period of time, or if you have essential commitments which impact your performance in an assessment, you may be eligible for special consideration or special arrangements.

Special consideration applications will not be affected by a simple extension application.

Using AI responsibly

Co-created with students, AI in Education includes lots of helpful examples of how students use generative AI tools to support their learning. It explains how generative AI works, the different tools available and how to use them responsibly and productively.

WK Topic Learning activity Learning outcomes

Attendance and class requirements

  • Attendance: Attendance at journal club, group presentation and case study is compulsory for all students. The material covered in these sessions is examinable and students will also receive a mark for tutorial participation. Attendance to lectures, tutorials and practical classes is compulsory and a roll will be kept. Failure to arrive on time will lead to loss of one mark from your final mark for each late arrival.
  • Required materials: Each student must attend class with safety glasses, a full–length laboratory coat/gown and wearing covered/enclosed footwear. It is the responsibility of each student to come prepared for each practical session. Only those who comply with the required standards above, and as set out in Australian Standards for Safety in Microbiological Laboratories AS/NZS 2243.3:2003, will be admitted to the X-lab.
  • Practicals: Students are required to record notes, experimental details and conclusions in their Practical lab book, as well as answer the relevant questions. Details of practical sessions are set out in the course schedule included in the practical book. The material covered in these sessions is examinable and students will receive a mark for their laboratory book.

Study commitment

Typically, there is a minimum expectation of 1.5-2 hours of student effort per week per credit point for units of study offered over a full semester. For a 6 credit point unit, this equates to roughly 120-150 hours of student effort in total.

Required readings

All readings for this unit can be accessed through the Library eReserve, available on Canvas.

  • Bacterial Pathogenesis: A Molecular Approach, Salyers, A.A. Wilson B. and Whitt, D. D.3rd Ed 2011 Wiley, USA.

Learning outcomes are what students know, understand and are able to do on completion of a unit of study. They are aligned with the University's graduate qualities and are assessed as part of the curriculum.

At the completion of this unit, you should be able to:

  • LO1. evaluate and assess scientific ideas and concepts
  • LO2. demonstrate competence and effectiveness in scientific communication
  • LO3. demonstrate independence when undertaking experimental work
  • LO4. apply current research and molecular diagnostic techniques to the workplace.

Graduate qualities

The graduate qualities are the qualities and skills that all University of Sydney graduates must demonstrate on successful completion of an award course. As a future Sydney graduate, the set of qualities have been designed to equip you for the contemporary world.

GQ1 Depth of disciplinary expertise

Deep disciplinary expertise is the ability to integrate and rigorously apply knowledge, understanding and skills of a recognised discipline defined by scholarly activity, as well as familiarity with evolving practice of the discipline.

GQ2 Critical thinking and problem solving

Critical thinking and problem solving are the questioning of ideas, evidence and assumptions in order to propose and evaluate hypotheses or alternative arguments before formulating a conclusion or a solution to an identified problem.

GQ3 Oral and written communication

Effective communication, in both oral and written form, is the clear exchange of meaning in a manner that is appropriate to audience and context.

GQ4 Information and digital literacy

Information and digital literacy is the ability to locate, interpret, evaluate, manage, adapt, integrate, create and convey information using appropriate resources, tools and strategies.

GQ5 Inventiveness

Generating novel ideas and solutions.

GQ6 Cultural competence

Cultural Competence is the ability to actively, ethically, respectfully, and successfully engage across and between cultures. In the Australian context, this includes and celebrates Aboriginal and Torres Strait Islander cultures, knowledge systems, and a mature understanding of contemporary issues.

GQ7 Interdisciplinary effectiveness

Interdisciplinary effectiveness is the integration and synthesis of multiple viewpoints and practices, working effectively across disciplinary boundaries.

GQ8 Integrated professional, ethical, and personal identity

An integrated professional, ethical and personal identity is understanding the interaction between one’s personal and professional selves in an ethical context.

GQ9 Influence

Engaging others in a process, idea or vision.

Outcome map

Learning outcomes Graduate qualities
GQ1 GQ2 GQ3 GQ4 GQ5 GQ6 GQ7 GQ8 GQ9

This section outlines changes made to this unit following staff and student reviews.

A white background to slides is now used, as students found it sometimes difficult to see text when printed out

Work, health and safety

We are governed by the Work Health and Safety Act 2011, Work Health and Safety Regulation 2011 and Codes of Practice. Penalties for non-compliance have increased. Everyone has a responsibility for health and safety at work. The University’s Work Health and Safety policy explains the responsibilities and expectations of workers and others, and the procedures for managing WHS risks associated with University activities.

General Laboratory Safety Rules

  • No eating or drinking is allowed in any laboratory under any circumstances

  • A laboratory coat and closed-toe shoes are mandatory

  • Follow safety instructions in your manual and posted in laboratories

  • In case of fire, follow instructions posted outside the laboratory door

  • First aid kits, eye wash and fire extinguishers are located in or immediately outside each laboratory

  • As a precautionary measure, it is recommended that you have a current tetanus immunisation. This can be obtained from University Health Service: unihealth.usyd.edu.au/

Disclaimer

The University reserves the right to amend units of study or no longer offer certain units, including where there are low enrolment numbers.

To help you understand common terms that we use at the University, we offer an online glossary.