PUBH5126: Intensive September - October, 2021

Units PUBH5126 Intensive September - October 2021 [Block mode]

Unit outline_

PUBH5126: Genomics and Public Health

Intensive September - October, 2021 [Block mode] - Camperdown/Darlington, Sydney

Overview

This unit caters for practitioners, policy and decision-makers, students and researchers in public health, public policy, journalism, law, epidemiology, medicine, science, industry, ethics, philosophy, screening, communication and advocacy. It gives a basic introduction to concepts in genetics and genomics, and covers real-life examples of how genetics and genomics is used in health settings including genomics for COVID-19 control, genomic testing and screening for cancer, familial hypercholesterolemia, newborns, community settings, and in outbreak investigations. It covers epidemiological, psychosocial, legal, ethical, education and policy aspects of genomic testing, and genetic determinants of disease.

Unit details and rules

Academic unit	Public Health
Credit points	6
Prerequisites ?	PUBH5010 or CEPI5100
Corequisites ?	None
Prohibitions ?	None
Assumed knowledge ?	Basic epidemiology No previous knowledge of genetics is required
Available to study abroad and exchange students	No

Teaching staff

Coordinator	Anne Cust, anne.cust@sydney.edu.au
Guest lecturer(s)	Vitali Sintchenko, vitali.sintchenko@sydney.edu.au
	Ainsley Newson, ainsley.newson@sydney.edu.au
	David Sullivan, david.sullivan@sydney.edu.au
	Kate Dunlop, kate.dunlop@sydney.edu.au
	Leslie Burnett, leslie.burnett@sydney.edu.au
	Ronald Trent, ronald.trent@sydney.edu.au
Lecturer(s)	Julia Steinberg, julia.steinberg@sydney.edu.au

Type	Description	Weight	Due	Length
Assignment	Assessment 5 Peer-assessed teamwork	5%	Week 09	Peer-assessed teamwork for assignment
Outcomes assessed:
Presentation	Assessment 3 Group presentation or debate	10%	Week 09	5 min
Outcomes assessed:
Assignment	Assessment 1 Online MCQ	15%	Week 09	30 questions in total (15 per day)
Outcomes assessed:
Assignment	Assessment 2 Written assignment.	25%	Week 11	1500 words
Outcomes assessed:
Assignment	Assessment 4 Written assignment (8 questions x 250 words/question)	45%	Week 13	2000 words
Outcomes assessed:
= group assignment ?

Assessment summary

Detailed information for each assessment can be found on Canvas.

Assessment criteria

The University awards common result grades, set out in the Coursework Policy 2014 (Schedule 1).

As a general guide, a high distinction indicates work of an exceptional standard, a distinction a very high standard, a credit a good standard, and a pass an acceptable standard.

Result name	Mark range	Description
High distinction	85 - 100
Distinction	75 - 84
Credit	65 - 74
Pass	50 - 64
Fail	0 - 49	When you don’t meet the learning outcomes of the unit to a satisfactory standard.

For more information see guide to grades.

Late submission

In accordance with University policy, these penalties apply when written work is submitted after 11:59pm on the due date:

Deduction of 5% of the maximum mark for each calendar day after the due date.
After ten calendar days late, a mark of zero will be awarded.

Academic integrity

The Current Student website provides information on academic integrity and the resources available to all students. The University expects students and staff to act ethically and honestly and will treat all allegations of academic integrity breaches seriously.

We use similarity detection software to detect potential instances of plagiarism or other forms of academic integrity breach. If such matches indicate evidence of plagiarism or other forms of academic integrity breaches, your teacher is required to report your work for further investigation.

Use of generative artificial intelligence (AI) and automated writing tools

You may only use generative AI and automated writing tools in assessment tasks if you are permitted to by your unit coordinator. If you do use these tools, you must acknowledge this in your work, either in a footnote or an acknowledgement section. The assessment instructions or unit outline will give guidance of the types of tools that are permitted and how the tools should be used.

Your final submitted work must be your own, original work. You must acknowledge any use of generative AI tools that have been used in the assessment, and any material that forms part of your submission must be appropriately referenced. For guidance on how to acknowledge the use of AI, please refer to the AI in Education Canvas site.

The unapproved use of these tools or unacknowledged use will be considered a breach of the Academic Integrity Policy and penalties may apply.

Studiosity is permitted unless otherwise indicated by the unit coordinator. The use of this service must be acknowledged in your submission as detailed on the Learning Hub’s Canvas page.

Outside assessment tasks, generative AI tools may be used to support your learning. The AI in Education Canvas site contains a number of productive ways that students are using AI to improve their learning.

Learning support

Simple extensions

If you encounter a problem submitting your work on time, you may be able to apply for an extension of five calendar days through a simple extension.  The application process will be different depending on the type of assessment and extensions cannot be granted for some assessment types like exams.

Special consideration

If exceptional circumstances mean you can’t complete an assessment, you need consideration for a longer period of time, or if you have essential commitments which impact your performance in an assessment, you may be eligible for special consideration or special arrangements.

Special consideration applications will not be affected by a simple extension application.

Using AI responsibly

Co-created with students, AI in Education includes lots of helpful examples of how students use generative AI tools to support their learning. It explains how generative AI works, the different tools available and how to use them responsibly and productively.

Weekly schedule

WK	Topic	Learning activity	Learning outcomes
Week 09	Workshop day 1	Workshop (8 hr)
Week 09	Workshop day 2	Workshop (8 hr)

Attendance and class requirements

1 x 2 day workshop – planned as face-to-face pending COVID restrictions. There is also substantial pre-reading before the course (distributed to students 3-4 weeks before the course starts) and an online component with pre-recorded lectures

Study commitment

Typically, there is a minimum expectation of 1.5-2 hours of student effort per week per credit point for units of study offered over a full semester. For a 6 credit point unit, this equates to roughly 120-150 hours of student effort in total.

Required readings

Pre-readings and pre-recorded lectures will be circulated to students 3-4 weeks before the workshop

Learning outcomes

Learning outcomes are what students know, understand and are able to do on completion of a unit of study. They are aligned with the University's graduate qualities and are assessed as part of the curriculum.

Outcomes
Graduate qualities

At the completion of this unit, you should be able to:

LO1. Define the general structure and functions of genes, their roles in health and disease and the concept of ‘penetrance’.
LO2. Identify the basic study designs to determine how strongly a disease is genetically determined and the contribution of gene and environment interaction to its cause
LO3. Evaluate the potential benefits and harms of genetic testing and genomic screening
LO4. Understand and critique the legal, ethical and psychosocial aspects of genomic information, practice and research
LO5. Identify and evaluate the potential that genomics and genomic research has to prevent disease and promote health
LO6. Identify new directions in genetics and genomics
LO7. Work cooperatively and collaboratively with other students on assessment tasks
LO8. Direct one’s own continuing education in genomics and public health

Graduate qualities

The graduate qualities are the qualities and skills that all University of Sydney graduates must demonstrate on successful completion of an award course. As a future Sydney graduate, the set of qualities have been designed to equip you for the contemporary world.

GQ1	Depth of disciplinary expertise Deep disciplinary expertise is the ability to integrate and rigorously apply knowledge, understanding and skills of a recognised discipline defined by scholarly activity, as well as familiarity with evolving practice of the discipline.
GQ2	Critical thinking and problem solving Critical thinking and problem solving are the questioning of ideas, evidence and assumptions in order to propose and evaluate hypotheses or alternative arguments before formulating a conclusion or a solution to an identified problem.
GQ3	Oral and written communication Effective communication, in both oral and written form, is the clear exchange of meaning in a manner that is appropriate to audience and context.
GQ4	Information and digital literacy Information and digital literacy is the ability to locate, interpret, evaluate, manage, adapt, integrate, create and convey information using appropriate resources, tools and strategies.
GQ5	Inventiveness Generating novel ideas and solutions.
GQ6	Cultural competence Cultural Competence is the ability to actively, ethically, respectfully, and successfully engage across and between cultures. In the Australian context, this includes and celebrates Aboriginal and Torres Strait Islander cultures, knowledge systems, and a mature understanding of contemporary issues.
GQ7	Interdisciplinary effectiveness Interdisciplinary effectiveness is the integration and synthesis of multiple viewpoints and practices, working effectively across disciplinary boundaries.
GQ8	Integrated professional, ethical, and personal identity An integrated professional, ethical and personal identity is understanding the interaction between one’s personal and professional selves in an ethical context.
GQ9	Influence Engaging others in a process, idea or vision.

Outcome map

Learning outcomes	Graduate qualities
Learning outcomes

Responding to student feedback

This section outlines changes made to this unit following staff and student reviews.

The content in the course is updated every year. We have shortened the workshop to 2 days and put more lectures online.

Additional information

A basic knowledge of epidemiology is required, but no previous knowledge of genetics and genomics is required.

Disclaimer

The University reserves the right to amend units of study or no longer offer certain units, including where there are low enrolment numbers.

To help you understand common terms that we use at the University, we offer an online glossary.

Current students

Overview

Overview

Unit details and rules

Teaching staff

Assessment

Assessment

Assessment summary

Assessment criteria

Late submission

Academic integrity

Learning support

Learning support

Simple extensions

Special consideration

Using AI responsibly

Weekly schedule

Weekly schedule

Attendance and class requirements

Study commitment

Required readings

Learning outcomes

Learning outcomes

Graduate qualities

Outcome map

Responding to student feedback

Responding to student feedback

Additional information

Additional information

Disclaimer

On this page

Useful links