Outline

Overview

This unit of study is designed to introduce students to the analysis of data they may face in their future careers, in particular data that are not well behaved. The data may be non-normal, there may be missing observations, they may be correlated in space and time or too numerous to analyse with standard models. The unit is presented in an applied context with an emphasis on correctly analysing authentic datasets, and interpreting the output. It begins with the analysis and design of experiments based on the general linear model. In the second part, students will learn about the generalisation of the general linear model to accommodate non-normal data with a particular emphasis on the binomial and Poisson distributions. In the third part linear mixed models will be introduced which provide the means to analyse datasets that do not meet the assumptions of independent and equal errors, for example data that is correlated in space and time. The unit ends with an introduction to machine learning and predictive modelling. A key feature of the unit is using R to develop coding skills that are become essential in science for processing and analysing datasets of ever increasing size.

Unit details and rules

Unit code	ENVX3002
Academic unit	Life and Environmental Sciences Academic Operations
Credit points	6
Prohibitions ?	None
Prerequisites ?	ENVX2001 or STAT2X12 or BIOL2X22 or DATA2X02 or QBIO2001
Corequisites ?	None
Assumed knowledge ?	None
Available to study abroad and exchange students	Yes

Teaching staff

Coordinator	Floris Van Ogtrop, floris.vanogtrop@sydney.edu.au
Lecturer(s)	Floris Van Ogtrop, floris.vanogtrop@sydney.edu.au
	Budiman Minasny, budiman.minasny@sydney.edu.au
	Aaron Greenville, aaron.greenville@sydney.edu.au
	Monica Bian, ranran.bian@sydney.edu.au

Type	Description	Weight	Due	Length
Supervised exam ?	Exam Final exam	40%	Formal exam period	2 hours
Outcomes assessed:
Assignment	Module 4 Report Data analysis and written report	15%	STUVAC Due date: 27 May 2024 at 23:59	See Canvas instructions
Outcomes assessed:
Assignment	Module 1 Report Data analysis and written report	15%	Week 05 Due date: 18 Mar 2024 at 23:59	See Canvas instructions
Outcomes assessed:
Assignment	Module 2 Report Data analysis and written report	15%	Week 07 Due date: 08 Apr 2024 at 23:59	See Canvas instructions
Outcomes assessed:
Assignment	Module 3 Report Data analysis and written report	15%	Week 11 Due date: 06 May 2024 at 23:59	See Canvas instructions
Outcomes assessed:

Assessment summary

Assessment tasks: Detailed information for each assessment can be found on the Canvas site.

Final exam: This assessment is compulsory and failure to attend, attempt, or submit will result in the award of an AF grade.

If a second replacement exam is required, this exam may be delivered via an alternative assessment method, such as a viva voce (oral exam). The alternative assessment will meet the same learning outcomes as the original exam. The format of the alternative assessment will be determined by the unit coordinator.

Assessment criteria

Result name	Mark range	Description
High distinction	85 - 100	At HD level, a student demonstrates a flair for the subject as well as a detailed and comprehensive understanding of the unit material. A ‘High Distinction’ reflects exceptional achievement and is awarded to a student who demonstrates the ability to apply their subject knowledge and understanding to produce original solutions for novel or highly complex problems and/or comprehensive critical discussions of theoretical concepts.
Distinction	75 - 84	At DI level, a student demonstrates an aptitude for the subject and a well-developed understanding of the unit material. A ‘Distinction’ reflects excellent achievement and is awarded to a student who demonstrates an ability to apply their subject knowledge and understanding of the subject to produce good solutions for challenging problems and/or a reasonably well-developed critical analysis of theoretical concepts.
Credit	65 - 74	At CR level, a student demonstrates a good command and knowledge of the unit material. A ‘Credit’ reflects solid achievement and is awarded to a student who has a broad general understanding of the unit material and can solve routine problems and/or identify and superficially discuss theoretical concepts.
Pass	50 - 64	At PS level, a student demonstrates proficiency in the unit material. A ‘Pass’ reflects satisfactory achievement and is awarded to a student who has threshold knowledge.
Fail	0 - 49	When you don’t meet the learning outcomes of the unit to a satisfactory standard.

For more information see guide to grades.

Late submission

In accordance with University policy, these penalties apply when written work is submitted after 11:59pm on the due date:

Deduction of 5% of the maximum mark for each calendar day after the due date.
After ten calendar days late, a mark of zero will be awarded.

This unit has an exception to the standard University policy or supplementary information has been provided by the unit coordinator. This information is displayed below:

Any assessment submitted after the due time and date (or extended due time and date) will incur a late penalty of 5% of the total marks per 24 hour period, or part thereof, late (note that this is applied to the mark gained after the submitted work is marked)

Academic integrity

The Current Student website provides information on academic integrity and the resources available to all students. The University expects students and staff to act ethically and honestly and will treat all allegations of academic integrity breaches seriously.

We use similarity detection software to detect potential instances of plagiarism or other forms of academic integrity breach. If such matches indicate evidence of plagiarism or other forms of academic integrity breaches, your teacher is required to report your work for further investigation.

You may only use artificial intelligence and writing assistance tools in assessment tasks if you are permitted to by your unit coordinator, and if you do use them, you must also acknowledge this in your work, either in a footnote or an acknowledgement section.

Studiosity is permitted for postgraduate units unless otherwise indicated by the unit coordinator. The use of this service must be acknowledged in your submission.

Learning support

Simple extensions

If you encounter a problem submitting your work on time, you may be able to apply for an extension of five calendar days through a simple extension.  The application process will be different depending on the type of assessment and extensions cannot be granted for some assessment types like exams.

Special consideration

If exceptional circumstances mean you can’t complete an assessment, you need consideration for a longer period of time, or if you have essential commitments which impact your performance in an assessment, you may be eligible for special consideration or special arrangements.

Special consideration applications will not be affected by a simple extension application.

Using AI responsibly

Co-created with students, AI in Education includes lots of helpful examples of how students use generative AI tools to support their learning. It explains how generative AI works, the different tools available and how to use them responsibly and productively.

Support for students

The Support for Students Policy 2023 reflects the University’s commitment to supporting students in their academic journey and making the University safe for students. It is important that you read and understand this policy so that you are familiar with the range of support services available to you and understand how to engage with them.

The University uses email as its primary source of communication with students who need support under the Support for Students Policy 2023. Make sure you check your University email regularly and respond to any communications received from the University.

Learning resources and detailed information about weekly assessment and learning activities can be accessed via Canvas. It is essential that you visit your unit of study Canvas site to ensure you are up to date with all of your tasks.

If you are having difficulties completing your studies, or are feeling unsure about your progress, we are here to help. You can access the support services offered by the University at any time:

Support and Services (including health and wellbeing services, financial support and learning support)
Course planning and administration
Meet with an Academic Adviser

Weekly schedule

WK	Topic	Learning activity
Week 01	Linear regression models	Workshop (5 hr)
Week 02	ANOVA and its extensions	Workshop (5 hr)
Week 03	General linear model	Workshop (5 hr)
Week 04	Generalised linear models: binary data	Workshop (5 hr)
Week 05	Generalised linear models: count data	Workshop (5 hr)
Week 06	Generalised additive models	Workshop (5 hr)
Week 07	Introduction to linear mixed models	Workshop (5 hr)
Week 08	Repeated-measures analysis	Workshop (5 hr)
Week 09	Generalised linear mixed models	Workshop (5 hr)
Week 10	Machine learning	Workshop (5 hr)
Week 11	Machine learning	Workshop (5 hr)
Week 12	Machine learning	Workshop (5 hr)

Attendance and class requirements

Under the Faculty of Science Resolutions (Policy):

(1) Students are expected to attend at least 80% of timetabled activities as defined in the unit of study outline, unless granted exemption by the Associate Dean.

(2) A student may fail a unit of study because of inadequate attendance

Study commitment

Typically, there is a minimum expectation of 1.5-2 hours of student effort per week per credit point for units of study offered over a full semester. For a 6 credit point unit, this equates to roughly 120-150 hours of student effort in total.

Learning outcomes

Learning outcomes are what students know, understand and are able to do on completion of a unit of study. They are aligned with the University's graduate qualities and are assessed as part of the curriculum.

Outcomes
Graduate qualities

At the completion of this unit, you should be able to:

LO1. Demonstrate advanced proficiency in experimental design and analysis of variance, including the application of the general linear model, through comprehensive data analyses and report writing.
LO2. Apply generalized linear models and generalized additive models to natural science datasets, critically assessing and interpreting the results within the context of their field-specific data.
LO3. Perform repeated measures analysis and utilize generalized linear mixed models, showcasing their ability to handle complex and dynamic datasets typical in natural sciences research
LO4. Integrate basic machine learning techniques into their data analysis repertoire, demonstrating an understanding of their application and relevance in the natural sciences
LO5. Develop and refine their research skills, preparing them for their professional career, honours-level projects and/or postgraduate research, by critically evaluating data analysis methods and results, and effectively communicating their findings in detailed reports.

Graduate qualities

The graduate qualities are the qualities and skills that all University of Sydney graduates must demonstrate on successful completion of an award course. As a future Sydney graduate, the set of qualities have been designed to equip you for the contemporary world.

GQ1	Depth of disciplinary expertise Deep disciplinary expertise is the ability to integrate and rigorously apply knowledge, understanding and skills of a recognised discipline defined by scholarly activity, as well as familiarity with evolving practice of the discipline.
GQ2	Critical thinking and problem solving Critical thinking and problem solving are the questioning of ideas, evidence and assumptions in order to propose and evaluate hypotheses or alternative arguments before formulating a conclusion or a solution to an identified problem.
GQ3	Oral and written communication Effective communication, in both oral and written form, is the clear exchange of meaning in a manner that is appropriate to audience and context.
GQ4	Information and digital literacy Information and digital literacy is the ability to locate, interpret, evaluate, manage, adapt, integrate, create and convey information using appropriate resources, tools and strategies.
GQ5	Inventiveness Generating novel ideas and solutions.
GQ6	Cultural competence Cultural Competence is the ability to actively, ethically, respectfully, and successfully engage across and between cultures. In the Australian context, this includes and celebrates Aboriginal and Torres Strait Islander cultures, knowledge systems, and a mature understanding of contemporary issues.
GQ7	Interdisciplinary effectiveness Interdisciplinary effectiveness is the integration and synthesis of multiple viewpoints and practices, working effectively across disciplinary boundaries.
GQ8	Integrated professional, ethical, and personal identity An integrated professional, ethical and personal identity is understanding the interaction between one’s personal and professional selves in an ethical context.
GQ9	Influence Engaging others in a process, idea or vision.

Outcome map

Learning outcomes	Graduate qualities
Learning outcomes

Responding to student feedback

This section outlines changes made to this unit following staff and student reviews.

Overall the feedback was positive for 2023 and we will continue to deliver this unit as is with some slight changes in particularly in response to feedback on the rubrics!

Additional information

Work, health and safety

We are governed by the Work Health and Safety Act 2011, Work Health and Safety Regulation 2011 and Codes of Practice. Penalties for non-compliance have increased. Everyone has a responsibility for health and safety at work. The University’s Work Health and Safety policy explains the responsibilities and expectations of workers and others, and the procedures for managing WHS risks associated with University activities.

General Laboratory Safety Rules

No eating or drinking is allowed in any laboratory under any circumstances
A laboratory coat and closed-toe shoes are mandatory
Follow safety instructions in your manual and posted in laboratories
In case of fire, follow instructions posted outside the laboratory door
First aid kits, eye wash and fire extinguishers are located in or immediately outside each laboratory
As a precautionary measure, it is recommended that you have a current tetanus immunisation. This can be obtained from University Health Service: unihealth.usyd.edu.au/

Disclaimer

The University reserves the right to amend units of study or no longer offer certain units, including where there are low enrolment numbers.

To help you understand common terms that we use at the University, we offer an online glossary.

Current students

Overview

Overview

Unit details and rules

Teaching staff

Assessment

Assessment

Assessment summary

Assessment criteria

Late submission

Academic integrity

Learning support

Learning support

Simple extensions

Special consideration

Using AI responsibly

Support for students

Weekly schedule

Weekly schedule

Attendance and class requirements

Study commitment

Learning outcomes

Learning outcomes

Graduate qualities

Outcome map

Responding to student feedback

Responding to student feedback

Additional information

Additional information

Work, health and safety

Disclaimer

On this page

Useful links

Media

Student links

About us

Connect

Current students

ENVX3002: Statistics in the Natural Sciences

Semester 1, 2024 [Normal day] - Camperdown/Darlington, Sydney

Overview

Overview

Unit details and rules

Teaching staff

Assessment

Assessment

Assessment summary

Assessment criteria

Late submission

Academic integrity

Learning support

Learning support

Simple extensions

Special consideration

Using AI responsibly

Support for students

Weekly schedule

Weekly schedule

Attendance and class requirements

Study commitment

Learning outcomes

Learning outcomes

Graduate qualities

Outcome map

Responding to student feedback

Responding to student feedback

Additional information

Additional information

Work, health and safety

Disclaimer

On this page

Useful links

Media

Student links

About us

Connect